Category Archives: DNA

DNA Structure (Core and AHL)

This is a short one – class presentation is here (click shadowed images for animations and movies):

Here’s a decent video from BBC AS Guru with David Suzuki:

And here’s a very stylized video of DNA structure from Hybrid Medical Animation. See if you can narrate it:

The story of the discovery of the double-helix structure is a good example international collaboration and competition, and led to the Nobel prize for Crick, Watson and Wilson (who we never hear about). You’ve got to feel for Rosalind Franklin – her work was key in their discovery and she wasn’t cited for it until after her death.

Here’s a great video, though the presenter sound like he has a mouth full of marbles:

Interactive Concepts in Biochemistry

Found this useful source on North Harris College’s linklist

Wiley.com have produced this online resource for Biochemistry and the Chemistry of Life, and it contains a whole load of interactives and animations.

It is an ideal resource for: photosynthesis, respiration, DNA replication, transcription, translation, cell structure, enzymes and protein synthesis.

New resources at Learn.Genetics

This is via the Learn.Genetics mailing list. Why not join – they only send mails out when there’s something worth reading.

Coming soon, Amazing Cells:activities and animations on cell processes and communication.

Also, a new interactive lab activity: Polymerase Chain Reaction Biotechniques lab.

Dawkins on Darwin & Channel 4’s ‘Genius of Darwin’

You can almost feel the Darwin fever as we near the 150th anniversary of the publishing of ‘On the Origin of Species‘. Channel 4 in the UK recently aired this special interview with Dawkisquawks talking about the life and work of Darwin. Their site is very good.

The whole lot has been posted to YouTube, but I doubt it will be there for long, so get on over and save it:

As Dawkins is wont to do, it is very long: Part 1, Part 2, Part 3, Part 4, Part 5, Part 6.

Channel 4 is also running a new series called “The Genius of Darwin“, so keep an eye out for that:

Here is episode 1: Part 1, Part 2, Part 3, Part 4, Part 5. And here’s the whole thing on GoogleVideo

Here is episode 2: Part 1, Part 2, Part 3, Part 4, Part 5. It’s not on GoogleVideo yet.

Episode 3 should be up next week.

I recently made another post about ‘On the Origin…’, so head over there for more links. And if you feel like testing the strength of your bookshelf, I can recommend Dawkins’ newest book, The Oxford Book of Modern Science Writing.

Genetic Engineering & Biotechnology linklist

This topic is Science at the moment, so let’s keep it as concise as possible. Some people go as far as studying a degree in all this, but that can wait for now!

Here’s the presentation for the IBDP Biology syllabus:

And here’s the revision page from Clcik4Biology

And now by topic:

Polymerase Chain Reaction

Very visual from Dolan DNA Learning Centre

McGraw Hill step-through

Rutgers step-through

and of course, the ever-so-silly PCR Song

Gel Electrophoresis and DNA Profiling (or DNA Fingerprinting)

Easy intro from Court TV

In-depth look from DNAi

DNA Learning Centre’s Electrophoresis animation

Learn.Genetics super-flashy animation

Case study: the case of the pothunters from Learn.Genetics

The Human Genome Project

Official Site How to sequence a genome

Teachers’ resources

Learn.Genetics genome resources

Outcomes: Bioinformatics DNA Microarrays 1 (2)

Outcomes: looking deeper into evolutionary relationships:

Gene Transfer Technology

McGraw Hill animation collection

NewScientist: gene therapy success reverses blindness

Gene Therapy in SCID (severe combined immunodeficiency) from Sumanas

Gene transfer in insulin production from abpi schools

Using the gene gun as a vector from Purdue

Genetic Modification in Crops and Animals

Glowing pigs and fish: Animal Farm TV series

GM food and you (objective, worth watching)

Cloning

Excellent animation from Dolan DNA Learning Centre

Video: Enucleation of an egg cell from Howard Hughes Medical Institute:

Download this Stem Cell cribsheet from SEED Magazine

Therapeutic cloning cures Parkinsons mice

More about cloning from ActionBioscience

If this catches your imagination, dig deeper!

Synthetic Biology – the man-made future?

Where’s the money in Biology? Probably where the future lies – genetics and synthetic biology.Synthetic Biology

As we learn more about genomes and the way different organisms (including pathogens) work, we can move towards creating targeted responses and DNA-level manipulation. Synthetic biologists take DNA and try to re-work it into a solution to a problem – by creating synthetic DNA, they hope to achieve control over the functions of the organism. They hope to generate alternative sources of fuel, targeted treatments and vaccines and many more applications.

Click on the image to the right to download a useful poster from SEED magazine.

BioBricks (company link) are a leading example of synthetic biology in action. Think of them like lego bricks or parts of standard computer code – you can take them and (theoretically) fit them into any genome. This is one of the wonders of DNA – base-pairings and the universality of the genetic code allow these researchers endless opportunities for tinkering and advancing science. Some BioBricks are ‘parts’, some are ‘devices’ and others are ‘systems’ – sections of code that increase in complexity and functionality.

There is an exciting world of information out there about this topic, and it’s well worth looking at if you think your future lies in biotechnology. It’s a discipline that pulls together Biology, Physics, Chemistry, Maths, Engineering and Programming, and the ways in are various. If you want to find out more about a career in synthetic biology, MIT are world-leaders in the field.

For a quick explanation of how synthetic biology works (and an interesting hardware/software analogy) watch the video from ScientificAmerican below:

You might also want to read ‘Prey’ by Michael Crichton for a bit of light holiday scare-mongering. Imagine ‘The Andromeda Strain‘ with nanoparticles.

And while we’re on the subject of Scientific American, you may as well check out their video channel on YouTube. It’s much like the NewScientist one.

Gene Therapy ‘Reverses Hereditary Blindness’

Awesome. And just in time for the Grade 11 Genetics unit!

Here’s the NewScientist article. And here’s an old one about gene therapy treating deafness.

Here is an article from the Guardian’s Science section that sums it up nicely.

Learn.Genetics @ Utah has loads of gene therapy interactives to learn more.

And for the hard-of-researching, here is the gene therapy wikipedia page.

Exciting times we live in.

Animal Farm (Not the Orwellian one)

A while ago I posted about glowing pigs and fish and couldn’t work out where it had come from. Thanks to stitchintime from the TES Boards, I found out it was from Channel 4’s ‘Animal Farm’ series on genetic engineering.

Here’s the first part of episode 1:

It’s probably a good idea to save all the parts of it before it gets taken down. Here’s the link.

Chromosomes, Genes, Alleles and Mutations

Chromosomes, Genes and Alleles:

Here’s a YouTube clip:

Let’s start with a tour of the basics from Learn.Genetics at Utah.

DNA coiling on histone proteins from biostudio.com

A description of chromosomes from Dexter Pratt

Zooming in to Chromosome 11 (a bit too advanced) from the DNA Learning Centre’s Gene Almanac

Transcription Java game from thinkquest.org
Mutations:

How do mutations occur? from the DNAi at the Dolan DNA Learning Centre

Evolution of Sickle Cell: Resistance to Malaria

Sickle Cell Anemia: A Mutation Story from the excellent Evolution Library.

Human Genome Project

First stop, the official website from the National Institute of Health

Here’s a great interactive from DNAi at the Dolan DNA Learning Centre

Now for some videos:

Mickey-Mouse introduction, bit of review on transcription and translation:….

If you have a spare hour (I don’t), here’s Charlie Rose interviewing Dr. J. Craig Venter:

Here’s James Watson (famous for co-discovering the structure of DNA and the first person to receive their own personal genome) chatting with NewScientist:

And don’t forget Learn.Genetics excellent site.